Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00975.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:885 original size:28 final size:28

Alignment explanation


    Indices: 845--902  Score: 116
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        835 GCTTCAAAGA

                                        
        845 AAGGTTATCACATTGAAGAGGTATAACT
          1 AAGGTTATCACATTGAAGAGGTATAACT

                                        
        873 AAGGTTATCACATTGAAGAGGTATAACT
          1 AAGGTTATCACATTGAAGAGGTATAACT

              
        901 AA
          1 AA

        903 TTTCTTAGTT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   30  1.00

ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28


Consensus pattern (28 bp):   
AAGGTTATCACATTGAAGAGGTATAACT
Done.