Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00556.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2978
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:510 original size:2 final size:2

Alignment explanation


    Indices: 503--536  Score: 59
    Period size: 2  Copynumber: 17.0  Consensus size: 2

        493 TTCAGCATGC

                         *                                    
        503 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

        537 GCGCCTTGTG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   30  1.00

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Found at i:2156 original size:62 final size:62

Alignment explanation


    Indices: 2059--2187  Score: 258
    Period size: 62  Copynumber: 2.1  Consensus size: 62

       2049 ATAAGAGCAA

                                                                          
       2059 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
          1 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG

                                                                          
       2121 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
          1 GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG

                 
       2183 GGTGT
          1 GGTGT

       2188 TCTCACCGAT


Statistics
Matches: 67,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  62   67  1.00

ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39


Consensus pattern (62 bp):   
GGTGTCATGTATGTTCTGCATCCATAGCTGCTTCTCTCCATGGAATGTATCTTCTGATCATG
Done.