Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00988.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4426
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30


Found at i:345 original size:5 final size:5

Alignment explanation


    Indices: 335--378  Score: 61
    Period size: 5  Copynumber: 8.8  Consensus size: 5

        325 ATTACCGTGA

                         *     *     *                          
        335 GGATT GGATT GCATT GCATT GCATT GGATT GGATT GGATT GGAT
          1 GGATT GGATT GGATT GGATT GGATT GGATT GGATT GGATT GGAT

        379 GGGTCTGCCC


Statistics
Matches: 37,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   5   37  1.00

ACGTcount: A:0.20, C:0.07, G:0.34, T:0.39


Consensus pattern (5 bp):   
GGATT

Done.