Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00990.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2626
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31


Found at i:1448 original size:62 final size:62

Alignment explanation


    Indices: 1351--1468  Score: 227
    Period size: 62  Copynumber: 1.9  Consensus size: 62

       1341 AATTTCCTAG

                                       *                                  
       1351 AATTCTTAACGATTAGAAGATATTTGCGCATGGTGTACCAATTAATGAGCTTAATGTGTTAT
          1 AATTCTTAACGATTAGAAGATATTTGCACATGGTGTACCAATTAATGAGCTTAATGTGTTAT

                                                                    
       1413 AATTCTTAACGATTAGAAGATATTTGCACATGGTGTACCAATTAATGAGCTTAATG
          1 AATTCTTAACGATTAGAAGATATTTGCACATGGTGTACCAATTAATGAGCTTAATG

       1469 AGTGTTATGT


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  62   55  1.00

ACGTcount: A:0.34, C:0.12, G:0.19, T:0.36


Consensus pattern (62 bp):   
AATTCTTAACGATTAGAAGATATTTGCACATGGTGTACCAATTAATGAGCTTAATGTGTTAT
Done.