Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00994.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3802
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33


Found at i:1416 original size:22 final size:25

Alignment explanation


    Indices: 1391--1440  Score: 61
    Period size: 22  Copynumber: 2.1  Consensus size: 25

       1381 GAGTTTAATA

                                     
       1391 GAAGAAATT-AGG-GAGAAA-CATG
          1 GAAGAAATTGAGGAGAGAAACCATG

                *     *              
       1413 GAAGTAATTGTGGAGAGAAACCATG
          1 GAAGAAATTGAGGAGAGAAACCATG

               
       1438 GAA
          1 GAA

       1441 AATCAGTGAG


Statistics
Matches: 23,  Mismatches: 2, Indels: 3
        0.82            0.07        0.11

Matches are distributed among these distances:
  22    8  0.35
  23    2  0.09
  24    6  0.26
  25    7  0.30

ACGTcount: A:0.46, C:0.06, G:0.32, T:0.16


Consensus pattern (25 bp):   
GAAGAAATTGAGGAGAGAAACCATG
Done.