Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g00998.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1416
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32


Found at i:853 original size:31 final size:31

Alignment explanation


    Indices: 815--909  Score: 138
    Period size: 31  Copynumber: 3.0  Consensus size: 31

        805 GCCCCCCAAA

                                           
        815 AAAAACCTAACCCAAAAAAAAAAAGAAAAAG
          1 AAAAACCTAACCCAAAAAAAAAAAGAAAAAG

                                              
        846 AAAAACCTAACCCAAAAAAAAAAGAAGAAAAAAG
          1 AAAAACCTAACCC-AAAAAAAAA-AAG-AAAAAG

                                     *     
        880 AAAAACCTAA-CCAAAATAAAAAAATAAAAA
          1 AAAAACCTAACCCAAAA-AAAAAAAGAAAAA

        910 AACCTAGCCA


Statistics
Matches: 59,  Mismatches: 1, Indels: 8
        0.87            0.01        0.12

Matches are distributed among these distances:
  31   18  0.31
  32   15  0.25
  33   10  0.17
  34   16  0.27

ACGTcount: A:0.75, C:0.15, G:0.05, T:0.05


Consensus pattern (31 bp):   
AAAAACCTAACCCAAAAAAAAAAAGAAAAAG

Found at i:866 original size:34 final size:33

Alignment explanation


    Indices: 815--911  Score: 130
    Period size: 33  Copynumber: 3.0  Consensus size: 33

        805 GCCCCCCAAA

                                             
        815 AAAAACCTAACCC--AAAAAAAAAAAGAAAAAG
          1 AAAAACCTAACCCAAAAAAAAAAAAAGAAAAAG

                                   *          
        846 AAAAACCTAACCCAAAAAAAAAAGAAGAAAAAAG
          1 AAAAACCTAACCCAAAAAAAAAAAAAG-AAAAAG

                                              
        880 AAAAACCTAA-CCAAAATAAAAAAATAA-AAAAA
          1 AAAAACCTAACCCAAAA-AAAAAAA-AAGAAAAA

        912 CCTAGCCACC


Statistics
Matches: 59,  Mismatches: 2, Indels: 8
        0.86            0.03        0.12

Matches are distributed among these distances:
  31   13  0.22
  33   22  0.37
  34   22  0.37
  35    2  0.03

ACGTcount: A:0.75, C:0.14, G:0.05, T:0.05


Consensus pattern (33 bp):   
AAAAACCTAACCCAAAAAAAAAAAAAGAAAAAG
Done.