Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01012.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2100
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:1766 original size:26 final size:26

Alignment explanation


    Indices: 1735--1787  Score: 88
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1725 AGAGATAAGC

                                      
       1735 GGTTAGAAAATACAGAGCGCAAGTAT
          1 GGTTAGAAAATACAGAGCGCAAGTAT

                             *   *    
       1761 GGTTAGAAAATACAGAGTGCATGTAT
          1 GGTTAGAAAATACAGAGCGCAAGTAT

             
       1787 G
          1 G

       1788 CCTTTTTCAC


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23


Consensus pattern (26 bp):   
GGTTAGAAAATACAGAGCGCAAGTAT
Done.