Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01022.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3166
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33


Found at i:149 original size:70 final size:70

Alignment explanation


    Indices: 66--206  Score: 282
    Period size: 70  Copynumber: 2.0  Consensus size: 70

         56 GTTCGCCTGC

                                                                             
         66 CTGGCTGCCTATCACAAATCCAAAAAACCCTAACTCTAAAAGTCTCCTAAAAGCTAATTCCGGCT
          1 CTGGCTGCCTATCACAAATCCAAAAAACCCTAACTCTAAAAGTCTCCTAAAAGCTAATTCCGGCT

                 
        131 TTCAG
         66 TTCAG

                                                                             
        136 CTGGCTGCCTATCACAAATCCAAAAAACCCTAACTCTAAAAGTCTCCTAAAAGCTAATTCCGGCT
          1 CTGGCTGCCTATCACAAATCCAAAAAACCCTAACTCTAAAAGTCTCCTAAAAGCTAATTCCGGCT

                 
        201 TTCAG
         66 TTCAG

             
        206 C
          1 C

        207 CGTTTCCTTT


Statistics
Matches: 71,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  70   71  1.00

ACGTcount: A:0.34, C:0.30, G:0.11, T:0.24


Consensus pattern (70 bp):   
CTGGCTGCCTATCACAAATCCAAAAAACCCTAACTCTAAAAGTCTCCTAAAAGCTAATTCCGGCT
TTCAG
Done.