Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01028.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2810
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32


Found at i:848 original size:6 final size:6

Alignment explanation


    Indices: 837--883  Score: 85
    Period size: 6  Copynumber: 7.8  Consensus size: 6

        827 TCACAAATGG

                                      *                           
        837 CTTCTC CTTCTC CTTCTC CTTCTT CTTCTC CTTCTC CTTCTC CTTCT
          1 CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCTC CTTCT

        884 TATATGCGTT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (6 bp):   
CTTCTC

Found at i:866 original size:24 final size:24

Alignment explanation


    Indices: 837--884  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        827 TCACAAATGG

                                    
        837 CTTCTCCTTCTCCTTCTCCTTCTT
          1 CTTCTCCTTCTCCTTCTCCTTCTT

                                    
        861 CTTCTCCTTCTCCTTCTCCTTCTT
          1 CTTCTCCTTCTCCTTCTCCTTCTT

        885 ATATGCGTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54


Consensus pattern (24 bp):   
CTTCTCCTTCTCCTTCTCCTTCTT
Done.