Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01036.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2129
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29


Found at i:37 original size:15 final size:14

Alignment explanation


    Indices: 15--45  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 14

          5 AAATAAATTT

                          
         15 AAAAAAAAAAAGAA
          1 AAAAAAAAAAAGAA

                           
         29 AAAAGAAAAAAAGAA
          1 AAAA-AAAAAAAGAA

              
         44 AA
          1 AA

         46 GGGAAGTAGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.25
  15   12  0.75

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (14 bp):   
AAAAAAAAAAAGAA
Done.