Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01039.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 955

Length: 1593
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.31


Found at i:1458 original size:47 final size:47

Alignment explanation


    Indices: 1401--1495  Score: 190
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1391 AAGATGCATG

                                                           
       1401 TATGTATGTAACTATAACTAAAATCTGTGAATATATATATATATATA
          1 TATGTATGTAACTATAACTAAAATCTGTGAATATATATATATATATA

                                                           
       1448 TATGTATGTAACTATAACTAAAATCTGTGAATATATATATATATATA
          1 TATGTATGTAACTATAACTAAAATCTGTGAATATATATATATATATA

             
       1495 T
          1 T

       1496 GTACAGTACA


Statistics
Matches: 48,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   48  1.00

ACGTcount: A:0.44, C:0.06, G:0.08, T:0.41


Consensus pattern (47 bp):   
TATGTATGTAACTATAACTAAAATCTGTGAATATATATATATATATA
Done.