Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01046.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 906
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36


Found at i:568 original size:115 final size:115

Alignment explanation


    Indices: 366--596  Score: 435
    Period size: 115  Copynumber: 2.0  Consensus size: 115

        356 ATCATCAGGA

                         *                                                   
        366 AAGAGCTGATCACGGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC
          1 AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC

                                                              
        431 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT
         66 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT

                                                                *            
        481 AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATGGTCATTCCACAC
          1 AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC

                                                         *    
        546 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTTACAT
         66 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT

             
        596 A
          1 A

        597 TTCCACCTTG


Statistics
Matches: 113,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 115  113  1.00

ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33


Consensus pattern (115 bp):   
AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC
CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT
Done.