Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01046.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2145
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.39


Found at i:1418 original size:115 final size:115

Alignment explanation


    Indices: 1216--1446  Score: 435
    Period size: 115  Copynumber: 2.0  Consensus size: 115

       1206 ACTGATAGGA

                         *                                                   
       1216 AAGAGCTGATCACGGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC
          1 AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC

                                                              
       1281 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT
         66 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT

                                                                *            
       1331 AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATGGTCATTCCACAC
          1 AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC

                                                         *    
       1396 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTTACAT
         66 CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT

             
       1446 A
          1 A

       1447 TTCCACCTTG


Statistics
Matches: 113,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 115  113  1.00

ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33


Consensus pattern (115 bp):   
AAGAGCTGATCACAGTACTGCTCTTTCCCATGGATGATCCACCTTGAATGATAGTCATTCCACAC
CAATTTCATTTGTTGGCCTTTGCTATAGTGTTGAAATCAAGGATTCACAT
Done.