Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01051.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2883
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29


Found at i:1141 original size:96 final size:96

Alignment explanation


    Indices: 863--1101  Score: 388
    Period size: 96  Copynumber: 2.5  Consensus size: 96

        853 GCCTTGTCCT

                *      *  *  *                                *              
        863 ACAACGGAACCCCAATACTGTTCTCTTAATGAAGTGTCCTATGAATACACCGAAGATTCTGAGAC
          1 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACACGGAAGATTCTGAGAC

                         *     *    *      
        928 CAGGCTTGACGTGGGGCTTCCTGGTTGTGAA
         66 CAGGCTTGACGTGAGGCTTTCTGGCTGTGAA

                    *                                        *               
        959 ACAAAGGAGCCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACATGGAAGATTCTGAGAC
          1 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACACGGAAGATTCTGAGAC

                                           
       1024 CAGGCTTGACGTGAGGCTTTCTGGCTGTGAA
         66 CAGGCTTGACGTGAGGCTTTCTGGCTGTGAA

                                                           
       1055 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATA
          1 ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATA

       1102 TAGGGAAAAT


Statistics
Matches: 132,  Mismatches: 11, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  96  132  1.00

ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28


Consensus pattern (96 bp):   
ACAAAGGAACCTCAGTATTGTTCTCTTAATGAAGTGTCCTATGAATACACGGAAGATTCTGAGAC
CAGGCTTGACGTGAGGCTTTCTGGCTGTGAA
Done.