Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00051.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2239
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28


Found at i:516 original size:15 final size:15

Alignment explanation


    Indices: 489--537  Score: 62
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        479 ACACCATCAC

                    *      
        489 CACCACCACCATTAT
          1 CACCACCATCATTAT

                           
        504 CACCACCATCATTAT
          1 CACCACCATCATTAT

              *   *     *  
        519 CATCACTATCATCAT
          1 CACCACCATCATTAT

                
        534 CACC
          1 CACC

        538 GCCGCCACTG


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  15   29  1.00

ACGTcount: A:0.33, C:0.43, G:0.00, T:0.24


Consensus pattern (15 bp):   
CACCACCATCATTAT
Done.