Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01053.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4057
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.33


Found at i:3412 original size:16 final size:16

Alignment explanation


    Indices: 3388--3418  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       3378 TTTCTTCACT

                            
       3388 TACTCACTTACTTAAA
          1 TACTCACTTACTTAAA

                *          
       3404 TACTTACTTACTTAA
          1 TACTCACTTACTTAA

       3419 TCAAATTTAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42


Consensus pattern (16 bp):   
TACTCACTTACTTAAA

Found at i:3424 original size:20 final size:20

Alignment explanation


    Indices: 3385--3424  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3375 AAATTTCTTC

                         * *    
       3385 ACTTACTCACTTACTTAAAT
          1 ACTTACTCACTTAATCAAAT

                   *            
       3405 ACTTACTTACTTAATCAAAT
          1 ACTTACTCACTTAATCAAAT

       3425 TTATTAATAA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  20   17  1.00

ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40


Consensus pattern (20 bp):   
ACTTACTCACTTAATCAAAT
Done.