Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01059.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 856

Length: 1427
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31


Found at i:1252 original size:15 final size:16

Alignment explanation


    Indices: 1232--1261  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       1222 CTTTTATATC

                            
       1232 TTTTTTGTT-TTTTTT
          1 TTTTTTGTTCTTTTTT

                           
       1247 TTTTTTGTTCTTTTT
          1 TTTTTTGTTCTTTTT

       1262 ATCAGTTAGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    9  0.64
  16    5  0.36

ACGTcount: A:0.00, C:0.03, G:0.07, T:0.90


Consensus pattern (16 bp):   
TTTTTTGTTCTTTTTT
Done.