Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01070.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3294
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.30


Found at i:2491 original size:22 final size:22

Alignment explanation


    Indices: 2463--2508  Score: 83
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       2453 TTTGAGCTGC

                             *    
       2463 TATGGACTTAAAAGTGGTTATG
          1 TATGGACTTAAAAGTGGCTATG

                                  
       2485 TATGGACTTAAAAGTGGCTATG
          1 TATGGACTTAAAAGTGGCTATG

              
       2507 TA
          1 TA

       2509 ATTTAAGACC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35


Consensus pattern (22 bp):   
TATGGACTTAAAAGTGGCTATG
Done.