Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01070.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4360
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32


Found at i:509 original size:2 final size:2

Alignment explanation


    Indices: 502--540  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

        492 TTTCTTTTCA

                                                          *           
        502 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

        541 TGAGAAAGGA


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54


Consensus pattern (2 bp):   
TC

Done.