Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00568.M2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4488
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:72 original size:6 final size:5

Alignment explanation


    Indices: 43--85  Score: 52
    Period size: 5  Copynumber: 8.6  Consensus size: 5

         33 TCTCTGCAAA

                     *                             *            
         43 TTTTC TTTCC TTTTC TTTTC TTTTC TTTT- TTTCC TTCTTC TTT
          1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TTT

         86 GTTTAGACAG


Statistics
Matches: 32,  Mismatches: 4, Indels: 4
        0.80            0.10        0.10

Matches are distributed among these distances:
   4    3  0.09
   5   25  0.78
   6    4  0.12

ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77


Consensus pattern (5 bp):   
TTTTC

Found at i:868 original size:12 final size:12

Alignment explanation


    Indices: 851--876  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        841 AAATGGGGGC

                        
        851 AATATATATATA
          1 AATATATATATA

                        
        863 AATATATATATA
          1 AATATATATATA

              
        875 AA
          1 AA

        877 CTGGAGTTGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (12 bp):   
AATATATATATA
Done.