Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01073.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 520

Length: 868
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:228 original size:6 final size:6

Alignment explanation


    Indices: 208--251  Score: 61
    Period size: 6  Copynumber: 7.2  Consensus size: 6

        198 CACCTTCTTC

                       *                            *          
        208 TCCCCTT TCCTCT TCCCCT TCCCCT TCCCCT TCCCTT TCCCCT T
          1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T

        252 GGGTTGTAAA


Statistics
Matches: 33,  Mismatches: 4, Indels: 1
        0.87            0.11        0.03

Matches are distributed among these distances:
   6   29  0.88
   7    4  0.12

ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41


Consensus pattern (6 bp):   
TCCCCT

Done.