Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01076.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 574

Length: 957
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37


Found at i:691 original size:26 final size:26

Alignment explanation


    Indices: 662--746  Score: 89
    Period size: 26  Copynumber: 3.3  Consensus size: 26

        652 GAGTCAGTCT

                   *    *             
        662 GAGGACCTTTGACTTTGAGTTGGTTG
          1 GAGGACCCTTGAGTTTGAGTTGGTTG

                *             * *   **
        688 GAGGTCCCTTGAGTTTGAATGGGTCC
          1 GAGGACCCTTGAGTTTGAGTTGGTTG

            *                         
        714 AAGGACCCTTGAGTTTGAGTTGGTTG
          1 GAGGACCCTTGAGTTTGAGTTGGTTG

              *    
        740 GAAGACC
          1 GAGGACC

        747 ACGAGTGGAT


Statistics
Matches: 44,  Mismatches: 15, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  26   44  1.00

ACGTcount: A:0.19, C:0.15, G:0.34, T:0.32


Consensus pattern (26 bp):   
GAGGACCCTTGAGTTTGAGTTGGTTG
Done.