Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01082.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2622
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.39


Found at i:381 original size:15 final size:15

Alignment explanation


    Indices: 361--412  Score: 59
    Period size: 15  Copynumber: 3.5  Consensus size: 15

        351 ATTCATTTTT

                           
        361 TTTTATTTGTAGACA
          1 TTTTATTTGTAGACA

                   * *   * 
        376 TTTTATTGGCAGAAA
          1 TTTTATTTGTAGACA

             *   *         
        391 TCTTAATTGTAGACA
          1 TTTTATTTGTAGACA

                   
        406 TTTTATT
          1 TTTTATT

        413 GGCAGAAATC


Statistics
Matches: 27,  Mismatches: 10, Indels: 0
        0.73            0.27        0.00

Matches are distributed among these distances:
  15   27  1.00

ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50


Consensus pattern (15 bp):   
TTTTATTTGTAGACA

Found at i:403 original size:30 final size:30

Alignment explanation


    Indices: 367--428  Score: 124
    Period size: 30  Copynumber: 2.1  Consensus size: 30

        357 TTTTTTTTAT

                                          
        367 TTGTAGACATTTTATTGGCAGAAATCTTAA
          1 TTGTAGACATTTTATTGGCAGAAATCTTAA

                                          
        397 TTGTAGACATTTTATTGGCAGAAATCTTAA
          1 TTGTAGACATTTTATTGGCAGAAATCTTAA

              
        427 TT
          1 TT

        429 AACTCTTAAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42


Consensus pattern (30 bp):   
TTGTAGACATTTTATTGGCAGAAATCTTAA
Done.