Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01086.C3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2232
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33


Found at i:216 original size:14 final size:14

Alignment explanation


    Indices: 197--240  Score: 61
    Period size: 14  Copynumber: 3.1  Consensus size: 14

        187 ATTTCCTGCT

                    *     
        197 TCTCTAAAACTCCA
          1 TCTCTAAATCTCCA

                     *   *
        211 TCTCTAAATTTCCT
          1 TCTCTAAATCTCCA

                          
        225 TCTCTAAATCTCCA
          1 TCTCTAAATCTCCA

              
        239 TC
          1 TC

        241 CTTCTGATTT


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  14   25  1.00

ACGTcount: A:0.27, C:0.34, G:0.00, T:0.39


Consensus pattern (14 bp):   
TCTCTAAATCTCCA

Found at i:770 original size:15 final size:15

Alignment explanation


    Indices: 739--785  Score: 51
    Period size: 15  Copynumber: 3.2  Consensus size: 15

        729 TTAGGCAGTT

                      * *  
        739 ATTATTATTATTCTA
          1 ATTATTATTAATATA

                           
        754 ATTATTATTAATATA
          1 ATTATTATTAATATA

                *  *       
        769 ATTAGTAATAA-ATA
          1 ATTATTATTAATATA

               
        783 ATT
          1 ATT

        786 TCATGAAATA


Statistics
Matches: 28,  Mismatches: 4, Indels: 1
        0.85            0.12        0.03

Matches are distributed among these distances:
  14    6  0.21
  15   22  0.79

ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51


Consensus pattern (15 bp):   
ATTATTATTAATATA
Done.