Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01091.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 823

Length: 1373
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29


Found at i:696 original size:19 final size:22

Alignment explanation


    Indices: 648--698  Score: 63
    Period size: 19  Copynumber: 2.5  Consensus size: 22

        638 ACACAAAGTC

                                  
        648 ACATGCCCGTGTGGACACAGGG
          1 ACATGCCCGTGTGGACACAGGG

               *            *     
        670 ACACGCCCGTGT-G-CCCA-GG
          1 ACATGCCCGTGTGGACACAGGG

                      
        689 ACATGCCCGT
          1 ACATGCCCGT

        699 ATCCTTAGGT


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  19   11  0.42
  20    3  0.12
  21    1  0.04
  22   11  0.42

ACGTcount: A:0.20, C:0.35, G:0.31, T:0.14


Consensus pattern (22 bp):   
ACATGCCCGTGTGGACACAGGG

Found at i:871 original size:36 final size:36

Alignment explanation


    Indices: 824--895  Score: 135
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        814 TCGTGTCTCA

                                    *           
        824 GCCTGTGTGGCCAACACTTAGGCTGTTTTCCAAGCC
          1 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC

                                                
        860 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
          1 GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC

        896 TTTATGTTAC


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.18, C:0.31, G:0.24, T:0.28


Consensus pattern (36 bp):   
GCCTGTGTGGCCAACACTTAGGCTATTTTCCAAGCC
Done.