Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 918

Length: 1530
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:1371 original size:4 final size:4

Alignment explanation


    Indices: 1364--1416  Score: 88
    Period size: 4  Copynumber: 13.2  Consensus size: 4

       1354 TATACATACA

                                        *                       *      
       1364 TATG TATG TATG TATG TATG TATT TATG TATG TATG TATG TACG TATG
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG

                  
       1412 TATG T
          1 TATG T

       1417 TCCAATCCCA


Statistics
Matches: 45,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   4   45  1.00

ACGTcount: A:0.25, C:0.02, G:0.23, T:0.51


Consensus pattern (4 bp):   
TATG

Done.