Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01106.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2929
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:1786 original size:67 final size:65

Alignment explanation


    Indices: 1677--1808  Score: 192
    Period size: 67  Copynumber: 2.0  Consensus size: 65

       1667 TGCTTGCAGA

                                 **   *                                      
       1677 AAGAAAATGTGTGTAAGATTTGTATGGCTTTTTGCCAAAATTACAGTTTAATATTTTTCTTGATT
          1 AAGAAAATGTGTGTAAGATTTAAATGACTTTTTGCCAAAATTACAGTTTAATATTTTTCTTGATT

                                                *  *            *            
       1742 AAGAAAATGTGAGTGTAAGATTTAAATGACTTTTTGTCATAATTACAGTTTAGTATTTTTCTTGA
          1 AAGAAAATGT--GTGTAAGATTTAAATGACTTTTTGCCAAAATTACAGTTTAATATTTTTCTTGA

              
       1807 TT
         64 TT

       1809 GAGTTTCCAA


Statistics
Matches: 59,  Mismatches: 6, Indels: 2
        0.88            0.09        0.03

Matches are distributed among these distances:
  65   10  0.17
  67   49  0.83

ACGTcount: A:0.32, C:0.07, G:0.17, T:0.45


Consensus pattern (65 bp):   
AAGAAAATGTGTGTAAGATTTAAATGACTTTTTGCCAAAATTACAGTTTAATATTTTTCTTGATT
Done.