Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01131.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5300
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.25


Found at i:26 original size:2 final size:2

Alignment explanation


    Indices: 19--55  Score: 56
    Period size: 2  Copynumber: 18.5  Consensus size: 2

          9 CTTCCTTTGT

                                             *        *            
         19 TC TC TC TC TC TC TC TC TC TC TC GC TC TC GC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T

         56 TTTCTTCTTT


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.00, C:0.49, G:0.05, T:0.46


Consensus pattern (2 bp):   
TC

Done.