Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01135.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 587

Length: 979
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34


Found at i:658 original size:31 final size:30

Alignment explanation


    Indices: 599--658  Score: 84
    Period size: 31  Copynumber: 2.0  Consensus size: 30

        589 ATTGAGAACT

                                **        
        599 GCAGCTAACCTCATTTTTTTTTTAATCTTG
          1 GCAGCTAACCTCATTTTTTTCCTAATCTTG

                                    *     
        629 GCAGCTAACCTCTATTTTTTTCCTGATCTT
          1 GCAGCTAACCTC-ATTTTTTTCCTAATCTT

        659 TGTCAACTGT


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  30   12  0.46
  31   14  0.54

ACGTcount: A:0.18, C:0.23, G:0.10, T:0.48


Consensus pattern (30 bp):   
GCAGCTAACCTCATTTTTTTCCTAATCTTG
Done.