Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01141.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6515
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:1379 original size:33 final size:32

Alignment explanation


    Indices: 1341--1433  Score: 159
    Period size: 33  Copynumber: 2.8  Consensus size: 32

       1331 GACTGAGTGG

                         *                   
       1341 GAGTGTTTGGTTGTTGGACAGGAGCTAGAATGT
          1 GAGTGTTTGGTTGCTGGACAGGAGCT-GAATGT

                                             
       1374 GAGTGTTTGGTTGCTGGACAGGAGCTGAAATGT
          1 GAGTGTTTGGTTGCTGGACAGGAGCTG-AATGT

                                       
       1407 GAGTGTTTGGTTGCTGGACAGGAGCTG
          1 GAGTGTTTGGTTGCTGGACAGGAGCTG

       1434 GAATCTCAAG


Statistics
Matches: 58,  Mismatches: 1, Indels: 2
        0.95            0.02        0.03

Matches are distributed among these distances:
  32    1  0.02
  33   57  0.98

ACGTcount: A:0.19, C:0.09, G:0.41, T:0.31


Consensus pattern (32 bp):   
GAGTGTTTGGTTGCTGGACAGGAGCTGAATGT
Done.