Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01147.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 845

Length: 1409
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43


Found at i:691 original size:16 final size:17

Alignment explanation


    Indices: 670--703  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        660 CCTAATAGGG

                             
        670 TTTTAAAAAT-AAATAA
          1 TTTTAAAAATAAAATAA

                    *        
        686 TTTTAAAATTAAAATAA
          1 TTTTAAAAATAAAATAA

             
        703 T
          1 T

        704 ATTTGAGCCT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    9  0.56
  17    7  0.44

ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41


Consensus pattern (17 bp):   
TTTTAAAAATAAAATAA

Done.