Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00052.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2859
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32


Found at i:1471 original size:2 final size:2

Alignment explanation


    Indices: 1464--1495  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

       1454 CTGATCAGGT

                                                 *         
       1464 TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

       1496 GTTATATATA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   2   28  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (2 bp):   
TC

Done.