Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01161.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 411

Length: 685
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35


Found at i:573 original size:14 final size:14

Alignment explanation


    Indices: 554--581  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        544 TCCTATTTTG

                          
        554 GTTATTTTTGATTT
          1 GTTATTTTTGATTT

                          
        568 GTTATTTTTGATTT
          1 GTTATTTTTGATTT

        582 TTTGGCATGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71


Consensus pattern (14 bp):   
GTTATTTTTGATTT
Done.