Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 475

Length: 792
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.41


Found at i:43 original size:4 final size:4

Alignment explanation


    Indices: 36--66  Score: 62
    Period size: 4  Copynumber: 7.8  Consensus size: 4

         26 TTTTTTCTCT

                                                  
         36 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
          1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT

         67 TGCTTATGCC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77


Consensus pattern (4 bp):   
TTTC

Done.