Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01169.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 970

Length: 1618
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31


Found at i:452 original size:33 final size:33

Alignment explanation


    Indices: 415--479  Score: 130
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        405 GCTTGTTGAG

                                             
        415 TTGAAATATCTCTTTTTAGTCTCCTTCAGTTTT
          1 TTGAAATATCTCTTTTTAGTCTCCTTCAGTTTT

                                            
        448 TTGAAATATCTCTTTTTAGTCTCCTTCAGTTT
          1 TTGAAATATCTCTTTTTAGTCTCCTTCAGTTT

        480 AGAGAATGGG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.18, C:0.18, G:0.09, T:0.54


Consensus pattern (33 bp):   
TTGAAATATCTCTTTTTAGTCTCCTTCAGTTTT
Done.