Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01185.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2519
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:1996 original size:84 final size:83

Alignment explanation


    Indices: 1856--2009  Score: 263
    Period size: 84  Copynumber: 1.8  Consensus size: 83

       1846 CAATTGTTCA

                                               *                             
       1856 ACACAAGCTCAACGAATGCAAACCAGCTGACATCAGTATCTAGTGATGTATACTCATCAAGATTT
          1 ACACAAGCTCAACGAATGCAAACCAGCTGACATCAATATCTAGTGATGTATACTCATCAAGATTT

                              
       1921 TTCGGTTTGAGCTTAGGT
         66 TTCGGTTTGAGCTTAGGT

                      *                                                 * *  
       1939 ACACAAGCTCCACGACATGCAAACCAGCTGACATCAATATCTAGTGATGTATACTCATCATGGTT
          1 ACACAAGCTCAACGA-ATGCAAACCAGCTGACATCAATATCTAGTGATGTATACTCATCAAGATT

                  
       2004 TTTCGG
         65 TTTCGG

       2010 CAATGGGCCA


Statistics
Matches: 66,  Mismatches: 4, Indels: 1
        0.93            0.06        0.01

Matches are distributed among these distances:
  83   14  0.21
  84   52  0.79

ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28


Consensus pattern (83 bp):   
ACACAAGCTCAACGAATGCAAACCAGCTGACATCAATATCTAGTGATGTATACTCATCAAGATTT
TTCGGTTTGAGCTTAGGT
Done.