Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga01g00582.P1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2822
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Found at i:1417 original size:67 final size:67
Alignment explanation
Indices: 1309--1443 Score: 252
Period size: 67 Copynumber: 2.0 Consensus size: 67
1299 AAATGGTATC
* *
1309 TTCAATTTCATCTTAATTTATTTGTACAATATTTGGTAAGAACATGTTATGTGTGTCTCGTATGC
1 TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC
1374 TG
66 TG
1376 TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC
1 TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC
1441 TG
66 TG
1443 T
1 T
1444 GTGTCACGTA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.46
Consensus pattern (67 bp):
TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC
TG
Found at i:2636 original size:12 final size:12
Alignment explanation
Indices: 2619--2643 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2609 TGCCATGTAA
2619 TAAATCTGAAAT
1 TAAATCTGAAAT
2631 TAAATCTGAAAT
1 TAAATCTGAAAT
2643 T
1 T
2644 TTGTTTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (12 bp):
TAAATCTGAAAT
Done.