Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00582.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2242
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:1417 original size:67 final size:67

Alignment explanation


    Indices: 1309--1443  Score: 252
    Period size: 67  Copynumber: 2.0  Consensus size: 67

       1299 AAATGGTATC

                                   *                                 *       
       1309 TTCAATTTCATCTTAATTTATTTGTACAATATTTGGTAAGAACATGTTATGTGTGTCTCGTATGC
          1 TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC

              
       1374 TG
         66 TG

                                                                             
       1376 TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC
          1 TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC

              
       1441 TG
         66 TG

             
       1443 T
          1 T

       1444 GTGTCACGTA


Statistics
Matches: 66,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  67   66  1.00

ACGTcount: A:0.27, C:0.12, G:0.16, T:0.46


Consensus pattern (67 bp):   
TTCAATTTCATCTTAATTTATTTATACAATATTTGGTAAGAACATGTTATGTGTGTCACGTATGC
TG
Done.