Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01200.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7955
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:6391 original size:24 final size:23

Alignment explanation


    Indices: 6346--6391  Score: 56
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       6336 AATTGCTTTT

                *         *  *     
       6346 TTTAGAATTTTTTATTTTAATTC
          1 TTTAAAATTTTTTAATTAAATTC

                                   
       6369 TTTAAAATTTTTGTAATTAAATT
          1 TTTAAAATTTTT-TAATTAAATT

       6392 TGAAGGGTTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  23   11  0.58
  24    8  0.42

ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61


Consensus pattern (23 bp):   
TTTAAAATTTTTTAATTAAATTC
Done.