Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01201.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34


Found at i:422 original size:26 final size:26

Alignment explanation


    Indices: 392--443  Score: 104
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        382 TGAAACACTG

                                      
        392 GGCCAAGACCAGAGGAGTGAATGCAA
          1 GGCCAAGACCAGAGGAGTGAATGCAA

                                      
        418 GGCCAAGACCAGAGGAGTGAATGCAA
          1 GGCCAAGACCAGAGGAGTGAATGCAA

        444 CTTACCAAAG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.38, C:0.19, G:0.35, T:0.08


Consensus pattern (26 bp):   
GGCCAAGACCAGAGGAGTGAATGCAA
Done.