Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00584.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 943

Length: 1573
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25


Found at i:1099 original size:24 final size:24

Alignment explanation


    Indices: 924--1090  Score: 280
    Period size: 24  Copynumber: 7.0  Consensus size: 24

        914 TACTGCTGGA

                     *              
        924 ATGCCTCCCCACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                     *              
        948 ATGCCTCCCCACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                     *              
        972 ATGCCTCCCCACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                                    
        996 ATGCCTCCCAACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                                    
       1020 ATGCCTCCCAACAACATGGGAGGG
          1 ATGCCTCCCAACAACATGGGAGGG

                 *               *  
       1044 ATGCCACCCAACAACATGGGAAGG
          1 ATGCCTCCCAACAACATGGGAGGG

                 *                 
       1068 ATGCCACCCAACAACATGGGAGG
          1 ATGCCTCCCAACAACATGGGAGG

       1091 AATGACACCG


Statistics
Matches: 139,  Mismatches: 4, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24  139  1.00

ACGTcount: A:0.29, C:0.31, G:0.28, T:0.11


Consensus pattern (24 bp):   
ATGCCTCCCAACAACATGGGAGGG

Found at i:1231 original size:60 final size:60

Alignment explanation


    Indices: 1158--1271  Score: 210
    Period size: 60  Copynumber: 1.9  Consensus size: 60

       1148 AACTGGCCCC

                                      *                                 
       1158 AACTATGGAAACGCTCCTGGAAATGCGCAGAACTTCCAACCCGGTCCTGGTCCTGGTCCT
          1 AACTATGGAAACGCTCCTGGAAATGCACAGAACTTCCAACCCGGTCCTGGTCCTGGTCCT

                                                     *            
       1218 AACTATGGAAACGCTCCTGGAAATGCACAGAACTTCCAACCTGGTCCTGGTCCT
          1 AACTATGGAAACGCTCCTGGAAATGCACAGAACTTCCAACCCGGTCCTGGTCCT

       1272 AACTATGGAA


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  60   52  1.00

ACGTcount: A:0.25, C:0.31, G:0.22, T:0.22


Consensus pattern (60 bp):   
AACTATGGAAACGCTCCTGGAAATGCACAGAACTTCCAACCCGGTCCTGGTCCTGGTCCT
Done.