Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01217.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2122
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.35


Found at i:1573 original size:12 final size:12

Alignment explanation


    Indices: 1556--1591  Score: 72
    Period size: 12  Copynumber: 3.0  Consensus size: 12

       1546 ACAATGTTAA

                        
       1556 TGTGATAATTTG
          1 TGTGATAATTTG

                        
       1568 TGTGATAATTTG
          1 TGTGATAATTTG

                        
       1580 TGTGATAATTTG
          1 TGTGATAATTTG

       1592 ATTTGCAAGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50


Consensus pattern (12 bp):   
TGTGATAATTTG

Found at i:1977 original size:47 final size:47

Alignment explanation


    Indices: 1923--2016  Score: 188
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1913 ATAGTGTTTA

                                                           
       1923 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
          1 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC

                                                           
       1970 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
          1 GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC

       2017 TACCTTTTCA


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   47  1.00

ACGTcount: A:0.40, C:0.21, G:0.15, T:0.23


Consensus pattern (47 bp):   
GCTGTTTGACGCTTTCAAGCCCTGAACAAAAGAAAAAAAAAACTTTC
Done.