Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01218.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1717
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32


Found at i:1528 original size:60 final size:60

Alignment explanation


    Indices: 1443--1564  Score: 244
    Period size: 60  Copynumber: 2.0  Consensus size: 60

       1433 TGATCAACAA

                                                                        
       1443 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG
          1 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG

                                                                        
       1503 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG
          1 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG

              
       1563 GG
          1 GG

       1565 TATTTTTATC


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  60   62  1.00

ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26


Consensus pattern (60 bp):   
GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG
Done.