Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01218.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2880
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35


Found at i:2691 original size:60 final size:60

Alignment explanation


    Indices: 2606--2727  Score: 244
    Period size: 60  Copynumber: 2.0  Consensus size: 60

       2596 TGATCAACAA

                                                                        
       2606 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG
          1 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG

                                                                        
       2666 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG
          1 GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG

              
       2726 GG
          1 GG

       2728 TATTTTTATC


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  60   62  1.00

ACGTcount: A:0.34, C:0.13, G:0.26, T:0.26


Consensus pattern (60 bp):   
GGAGGAGTTCCAATTGGCGTTATTCAAAACAAACAAAAAGGAGAGTTTATTTGCTGATCG
Done.