Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01223.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 960

Length: 1601
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26


Found at i:888 original size:15 final size:15

Alignment explanation


    Indices: 870--901  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        860 TCTGATTTCC

                  *        
        870 ATGATCCTGATGATG
          1 ATGATCATGATGATG

                           
        885 ATGATCATGATGATG
          1 ATGATCATGATGATG

              
        900 AT
          1 AT

        902 CAAAACAGTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34


Consensus pattern (15 bp):   
ATGATCATGATGATG

Found at i:894 original size:12 final size:12

Alignment explanation


    Indices: 879--903  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        869 CATGATCCTG

                        
        879 ATGATGATGATC
          1 ATGATGATGATC

                        
        891 ATGATGATGATC
          1 ATGATGATGATC

             
        903 A
          1 A

        904 AAACAGTCCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32


Consensus pattern (12 bp):   
ATGATGATGATC
Done.