Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01229.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9190
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35


Found at i:4031 original size:32 final size:32

Alignment explanation


    Indices: 3989--4089  Score: 159
    Period size: 32  Copynumber: 3.1  Consensus size: 32

       3979 GTGTTTGGTG

                          *    *             
       3989 ATGTGAGTGTTTTGCTGCTGGACAGGAGCTGGA
          1 ATGTG-GTGTTTTGTTGCTAGACAGGAGCTGGA

                                            
       4022 ATGTGGTGTTTTGTTGCTAGACAGGAGCTGGA
          1 ATGTGGTGTTTTGTTGCTAGACAGGAGCTGGA

                                             
       4054 ATGTGG-GTGTTTGTTGCTAGACAGGAGCTGGA
          1 ATGTGGTGT-TTTGTTGCTAGACAGGAGCTGGA

                
       4086 ATGT
          1 ATGT

       4090 CAAGAAGAAA


Statistics
Matches: 65,  Mismatches: 2, Indels: 3
        0.93            0.03        0.04

Matches are distributed among these distances:
  31    2  0.03
  32   58  0.89
  33    5  0.08

ACGTcount: A:0.19, C:0.10, G:0.39, T:0.33


Consensus pattern (32 bp):   
ATGTGGTGTTTTGTTGCTAGACAGGAGCTGGA
Done.