Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01249.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3738
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:87 original size:23 final size:23

Alignment explanation


    Indices: 46--109  Score: 98
    Period size: 23  Copynumber: 2.9  Consensus size: 23

         36 TGCCGTCGAC

                                    
         46 CATCTG-C-TCCAGCCA-CTGGTG
          1 CATCTGCCGTCCA-CCACCTGGTG

                                   
         67 CATCTGCCGTCCACCACCTGGTG
          1 CATCTGCCGTCCACCACCTGGTG

                                
         90 CATCTGCCGTCCACCACCTG
          1 CATCTGCCGTCCACCACCTG

        110 CTCCAGCCAC


Statistics
Matches: 40,  Mismatches: 0, Indels: 4
        0.91            0.00        0.09

Matches are distributed among these distances:
  21    6  0.15
  22    4  0.10
  23   30  0.75

ACGTcount: A:0.14, C:0.44, G:0.20, T:0.22


Consensus pattern (23 bp):   
CATCTGCCGTCCACCACCTGGTG

Done.