Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01260.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36


Found at i:186 original size:69 final size:71

Alignment explanation


    Indices: 49--204  Score: 253
    Period size: 69  Copynumber: 2.2  Consensus size: 71

         39 TCAACTTTAC

                                    *                                        
         49 CCTTCTCCCTCTTTTTCATTCTCATGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
          1 CCTTCTCCCTC-TTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC

                   
        114 CTTCCAA
         65 CTTCCAA

            *      *                                                         
        121 TCTTCTCTCTCTTTTCATTCTCACGTCTGAAGCAT-TTC-TTTTTTCATTCTTCTTCCCATTTCC
          1 CCTTCTCCCTCTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTCC

                * 
        184 TTCCGA
         66 TTCCAA

                           
        190 CCTTCTCCCTCTTTT
          1 CCTTCTCCCTCTTTT

        205 TCATGCTTTT


Statistics
Matches: 78,  Mismatches: 6, Indels: 3
        0.90            0.07        0.03

Matches are distributed among these distances:
  69   43  0.55
  70    3  0.04
  71   23  0.29
  72    9  0.12

ACGTcount: A:0.11, C:0.34, G:0.04, T:0.51


Consensus pattern (71 bp):   
CCTTCTCCCTCTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTCC
TTCCAA
Done.