Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01264.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 747

Length: 1246
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32


Found at i:363 original size:17 final size:15

Alignment explanation


    Indices: 333--366  Score: 50
    Period size: 17  Copynumber: 2.1  Consensus size: 15

        323 ACGAAGTCCC

                           
        333 CCTCCCTTTCCCTCA
          1 CCTCCCTTTCCCTCA

                             
        348 CCTCCCTCTCTCCCTCA
          1 CCTCCCT-T-TCCCTCA

              
        365 CC
          1 CC

        367 CGTTGCCCTC


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    7  0.41
  16    1  0.06
  17    9  0.53

ACGTcount: A:0.06, C:0.65, G:0.00, T:0.29


Consensus pattern (15 bp):   
CCTCCCTTTCCCTCA
Done.