Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga03g01265.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 961

Length: 1602
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28


Found at i:176 original size:22 final size:22

Alignment explanation


    Indices: 151--198  Score: 69
    Period size: 22  Copynumber: 2.2  Consensus size: 22

        141 ACACACGCTT

                     *            
        151 TCTCCCTCCTTCTCTCTCTCTC
          1 TCTCCCTCCCTCTCTCTCTCTC

                         *   *    
        173 TCTCCCTCCCTCTTTCTTTCTC
          1 TCTCCCTCCCTCTCTCTCTCTC

                
        195 TCTC
          1 TCTC

        199 TTATCTCTTT


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (22 bp):   
TCTCCCTCCCTCTCTCTCTCTC
Done.